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Modified and created a new python class for generating a report of metrics for machine learning
C++ and STL - Machine Learning ProblemPattern recognition and machine learning - Bernoulli mixture modelRandom forest and machine learningStacking and folding machine-learning algorithmTrending Machine Learning topics for AlexaCode for training machine learning linear regression and SVMGreedy adaptive dictionary (GAD) for supervised machine learningTic Tac Toe engine in Python for Deep LearningPython class for organizing images for machine learningCustom Vector and Matrix classes in python for machine learning
$begingroup$
I initially posted a question on SO. I have come up with an answer for the same. Basically, given two dicts of models and parameters, user can create an object, and get the report in 5 steps.
Following is the code.
import numpy as np
import pandas as pd
from sklearn.model_selection import train_test_split, GridSearchCV
from sklearn.ensemble import RandomForestClassifier
from sklearn.linear_model import LogisticRegression
from sklearn.svm import SVC
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.metrics import f1_score, roc_auc_score, recall_score, precision_score
from sklearn import datasets
from sklearn.pipeline import Pipeline
from sklearn.base import BaseEstimator
import warnings
warnings.filterwarnings('ignore')
cancer = datasets.load_breast_cancer()
df = pd.DataFrame(cancer.data, columns=cancer.feature_names)
df['target'] = cancer.target
target = df['target']
X_train, X_test, y_train, y_test = train_test_split(df.drop(columns='target', axis=1), target, test_size=0.4, random_state=13, stratify=target)
class ClfSwitcher(BaseEstimator):
def __init__(self, model=RandomForestClassifier()):
"""
A Custom BaseEstimator that can switch between classifiers.
:param estimator: sklearn object - The classifier
"""
self.model = model
def fit(self, X, y=None, **kwargs):
self.model.fit(X, y)
return self
def predict(self, X, y=None):
return self.model.predict(X)
def predict_proba(self, X):
return self.model.predict_proba(X)
def score(self, X, y):
return self.estimator.score(X, y)
class report(ClfSwitcher):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.grid = None
self.full_report = None
self.concise_report = None
self.scoring_metrics =
'precision': precision_score,
'recall': recall_score,
'f1': f1_score,
'roc_auc': roc_auc_score
def griddy(self, pipeLine, parameters, **kwargs):
self.grid = GridSearchCV(pipeLine, parameters, scoring='accuracy', n_jobs=-1)
def fit_grid(self, X_train, y_train=None, **kwargs):
self.grid.fit(X_train, y_train)
def make_grid_report(self):
self.full_report = pd.DataFrame(self.grid.cv_results_)
@staticmethod
def get_names(col):
return col.__class__.__name__
@staticmethod
def calc_score(col, metric):
return round(metric(y_test, col.fit(X_train, y_train).predict(X_test)), 4)
def make_concise_report(self):
self.concise_report = pd.DataFrame(self.grid.cv_results_)
self.concise_report['model_names'] = self.concise_report['param_cst__model'].apply(self.get_names)
self.concise_report = self.concise_report.sort_values(['model_names', 'rank_test_score'], ascending=[True, False])
.groupby(['model_names']).head(1)[['param_cst__model', 'model_names']]
.reset_index(drop=True)
for metric_name, metric_func in self.scoring_metrics.items():
self.concise_report[metric_name] = self.concise_report['param_cst__model'].apply(self.calc_score, metric=metric_func)
self.concise_report = self.concise_report[['model_names', 'precision', 'recall', 'f1', 'roc_auc', 'param_cst__model']]
pipeline = Pipeline([
('cst', ClfSwitcher()),
])
parameters = [
'cst__model': [RandomForestClassifier()],
'cst__model__n_estimators': [10, 20],
'cst__model__max_depth': [5, 10],
'cst__model__criterion': ['gini', 'entropy']
,
'cst__model': [SVC()],
'cst__model__C': [10, 20],
'cst__model__kernel': ['linear'],
'cst__model__gamma': [0.0001, 0.001]
,
'cst__model': [LogisticRegression()],
'cst__model__C': [13, 17],
'cst__model__penalty': ['l1', 'l2']
,
'cst__model': [GradientBoostingClassifier()],
'cst__model__n_estimators': [10, 50],
'cst__model__max_depth': [3, 5],
'cst__model__min_samples_leaf': [1, 2]
]
my_report = report()
my_report.griddy(pipeline, parameters, scoring='f1')
my_report.fit_grid(X_train, y_train)
my_report.make_concise_report()
my_report.concise_report
python machine-learning
$endgroup$
add a comment |
$begingroup$
I initially posted a question on SO. I have come up with an answer for the same. Basically, given two dicts of models and parameters, user can create an object, and get the report in 5 steps.
Following is the code.
import numpy as np
import pandas as pd
from sklearn.model_selection import train_test_split, GridSearchCV
from sklearn.ensemble import RandomForestClassifier
from sklearn.linear_model import LogisticRegression
from sklearn.svm import SVC
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.metrics import f1_score, roc_auc_score, recall_score, precision_score
from sklearn import datasets
from sklearn.pipeline import Pipeline
from sklearn.base import BaseEstimator
import warnings
warnings.filterwarnings('ignore')
cancer = datasets.load_breast_cancer()
df = pd.DataFrame(cancer.data, columns=cancer.feature_names)
df['target'] = cancer.target
target = df['target']
X_train, X_test, y_train, y_test = train_test_split(df.drop(columns='target', axis=1), target, test_size=0.4, random_state=13, stratify=target)
class ClfSwitcher(BaseEstimator):
def __init__(self, model=RandomForestClassifier()):
"""
A Custom BaseEstimator that can switch between classifiers.
:param estimator: sklearn object - The classifier
"""
self.model = model
def fit(self, X, y=None, **kwargs):
self.model.fit(X, y)
return self
def predict(self, X, y=None):
return self.model.predict(X)
def predict_proba(self, X):
return self.model.predict_proba(X)
def score(self, X, y):
return self.estimator.score(X, y)
class report(ClfSwitcher):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.grid = None
self.full_report = None
self.concise_report = None
self.scoring_metrics =
'precision': precision_score,
'recall': recall_score,
'f1': f1_score,
'roc_auc': roc_auc_score
def griddy(self, pipeLine, parameters, **kwargs):
self.grid = GridSearchCV(pipeLine, parameters, scoring='accuracy', n_jobs=-1)
def fit_grid(self, X_train, y_train=None, **kwargs):
self.grid.fit(X_train, y_train)
def make_grid_report(self):
self.full_report = pd.DataFrame(self.grid.cv_results_)
@staticmethod
def get_names(col):
return col.__class__.__name__
@staticmethod
def calc_score(col, metric):
return round(metric(y_test, col.fit(X_train, y_train).predict(X_test)), 4)
def make_concise_report(self):
self.concise_report = pd.DataFrame(self.grid.cv_results_)
self.concise_report['model_names'] = self.concise_report['param_cst__model'].apply(self.get_names)
self.concise_report = self.concise_report.sort_values(['model_names', 'rank_test_score'], ascending=[True, False])
.groupby(['model_names']).head(1)[['param_cst__model', 'model_names']]
.reset_index(drop=True)
for metric_name, metric_func in self.scoring_metrics.items():
self.concise_report[metric_name] = self.concise_report['param_cst__model'].apply(self.calc_score, metric=metric_func)
self.concise_report = self.concise_report[['model_names', 'precision', 'recall', 'f1', 'roc_auc', 'param_cst__model']]
pipeline = Pipeline([
('cst', ClfSwitcher()),
])
parameters = [
'cst__model': [RandomForestClassifier()],
'cst__model__n_estimators': [10, 20],
'cst__model__max_depth': [5, 10],
'cst__model__criterion': ['gini', 'entropy']
,
'cst__model': [SVC()],
'cst__model__C': [10, 20],
'cst__model__kernel': ['linear'],
'cst__model__gamma': [0.0001, 0.001]
,
'cst__model': [LogisticRegression()],
'cst__model__C': [13, 17],
'cst__model__penalty': ['l1', 'l2']
,
'cst__model': [GradientBoostingClassifier()],
'cst__model__n_estimators': [10, 50],
'cst__model__max_depth': [3, 5],
'cst__model__min_samples_leaf': [1, 2]
]
my_report = report()
my_report.griddy(pipeline, parameters, scoring='f1')
my_report.fit_grid(X_train, y_train)
my_report.make_concise_report()
my_report.concise_report
python machine-learning
$endgroup$
add a comment |
$begingroup$
I initially posted a question on SO. I have come up with an answer for the same. Basically, given two dicts of models and parameters, user can create an object, and get the report in 5 steps.
Following is the code.
import numpy as np
import pandas as pd
from sklearn.model_selection import train_test_split, GridSearchCV
from sklearn.ensemble import RandomForestClassifier
from sklearn.linear_model import LogisticRegression
from sklearn.svm import SVC
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.metrics import f1_score, roc_auc_score, recall_score, precision_score
from sklearn import datasets
from sklearn.pipeline import Pipeline
from sklearn.base import BaseEstimator
import warnings
warnings.filterwarnings('ignore')
cancer = datasets.load_breast_cancer()
df = pd.DataFrame(cancer.data, columns=cancer.feature_names)
df['target'] = cancer.target
target = df['target']
X_train, X_test, y_train, y_test = train_test_split(df.drop(columns='target', axis=1), target, test_size=0.4, random_state=13, stratify=target)
class ClfSwitcher(BaseEstimator):
def __init__(self, model=RandomForestClassifier()):
"""
A Custom BaseEstimator that can switch between classifiers.
:param estimator: sklearn object - The classifier
"""
self.model = model
def fit(self, X, y=None, **kwargs):
self.model.fit(X, y)
return self
def predict(self, X, y=None):
return self.model.predict(X)
def predict_proba(self, X):
return self.model.predict_proba(X)
def score(self, X, y):
return self.estimator.score(X, y)
class report(ClfSwitcher):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.grid = None
self.full_report = None
self.concise_report = None
self.scoring_metrics =
'precision': precision_score,
'recall': recall_score,
'f1': f1_score,
'roc_auc': roc_auc_score
def griddy(self, pipeLine, parameters, **kwargs):
self.grid = GridSearchCV(pipeLine, parameters, scoring='accuracy', n_jobs=-1)
def fit_grid(self, X_train, y_train=None, **kwargs):
self.grid.fit(X_train, y_train)
def make_grid_report(self):
self.full_report = pd.DataFrame(self.grid.cv_results_)
@staticmethod
def get_names(col):
return col.__class__.__name__
@staticmethod
def calc_score(col, metric):
return round(metric(y_test, col.fit(X_train, y_train).predict(X_test)), 4)
def make_concise_report(self):
self.concise_report = pd.DataFrame(self.grid.cv_results_)
self.concise_report['model_names'] = self.concise_report['param_cst__model'].apply(self.get_names)
self.concise_report = self.concise_report.sort_values(['model_names', 'rank_test_score'], ascending=[True, False])
.groupby(['model_names']).head(1)[['param_cst__model', 'model_names']]
.reset_index(drop=True)
for metric_name, metric_func in self.scoring_metrics.items():
self.concise_report[metric_name] = self.concise_report['param_cst__model'].apply(self.calc_score, metric=metric_func)
self.concise_report = self.concise_report[['model_names', 'precision', 'recall', 'f1', 'roc_auc', 'param_cst__model']]
pipeline = Pipeline([
('cst', ClfSwitcher()),
])
parameters = [
'cst__model': [RandomForestClassifier()],
'cst__model__n_estimators': [10, 20],
'cst__model__max_depth': [5, 10],
'cst__model__criterion': ['gini', 'entropy']
,
'cst__model': [SVC()],
'cst__model__C': [10, 20],
'cst__model__kernel': ['linear'],
'cst__model__gamma': [0.0001, 0.001]
,
'cst__model': [LogisticRegression()],
'cst__model__C': [13, 17],
'cst__model__penalty': ['l1', 'l2']
,
'cst__model': [GradientBoostingClassifier()],
'cst__model__n_estimators': [10, 50],
'cst__model__max_depth': [3, 5],
'cst__model__min_samples_leaf': [1, 2]
]
my_report = report()
my_report.griddy(pipeline, parameters, scoring='f1')
my_report.fit_grid(X_train, y_train)
my_report.make_concise_report()
my_report.concise_report
python machine-learning
$endgroup$
I initially posted a question on SO. I have come up with an answer for the same. Basically, given two dicts of models and parameters, user can create an object, and get the report in 5 steps.
Following is the code.
import numpy as np
import pandas as pd
from sklearn.model_selection import train_test_split, GridSearchCV
from sklearn.ensemble import RandomForestClassifier
from sklearn.linear_model import LogisticRegression
from sklearn.svm import SVC
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.metrics import f1_score, roc_auc_score, recall_score, precision_score
from sklearn import datasets
from sklearn.pipeline import Pipeline
from sklearn.base import BaseEstimator
import warnings
warnings.filterwarnings('ignore')
cancer = datasets.load_breast_cancer()
df = pd.DataFrame(cancer.data, columns=cancer.feature_names)
df['target'] = cancer.target
target = df['target']
X_train, X_test, y_train, y_test = train_test_split(df.drop(columns='target', axis=1), target, test_size=0.4, random_state=13, stratify=target)
class ClfSwitcher(BaseEstimator):
def __init__(self, model=RandomForestClassifier()):
"""
A Custom BaseEstimator that can switch between classifiers.
:param estimator: sklearn object - The classifier
"""
self.model = model
def fit(self, X, y=None, **kwargs):
self.model.fit(X, y)
return self
def predict(self, X, y=None):
return self.model.predict(X)
def predict_proba(self, X):
return self.model.predict_proba(X)
def score(self, X, y):
return self.estimator.score(X, y)
class report(ClfSwitcher):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.grid = None
self.full_report = None
self.concise_report = None
self.scoring_metrics =
'precision': precision_score,
'recall': recall_score,
'f1': f1_score,
'roc_auc': roc_auc_score
def griddy(self, pipeLine, parameters, **kwargs):
self.grid = GridSearchCV(pipeLine, parameters, scoring='accuracy', n_jobs=-1)
def fit_grid(self, X_train, y_train=None, **kwargs):
self.grid.fit(X_train, y_train)
def make_grid_report(self):
self.full_report = pd.DataFrame(self.grid.cv_results_)
@staticmethod
def get_names(col):
return col.__class__.__name__
@staticmethod
def calc_score(col, metric):
return round(metric(y_test, col.fit(X_train, y_train).predict(X_test)), 4)
def make_concise_report(self):
self.concise_report = pd.DataFrame(self.grid.cv_results_)
self.concise_report['model_names'] = self.concise_report['param_cst__model'].apply(self.get_names)
self.concise_report = self.concise_report.sort_values(['model_names', 'rank_test_score'], ascending=[True, False])
.groupby(['model_names']).head(1)[['param_cst__model', 'model_names']]
.reset_index(drop=True)
for metric_name, metric_func in self.scoring_metrics.items():
self.concise_report[metric_name] = self.concise_report['param_cst__model'].apply(self.calc_score, metric=metric_func)
self.concise_report = self.concise_report[['model_names', 'precision', 'recall', 'f1', 'roc_auc', 'param_cst__model']]
pipeline = Pipeline([
('cst', ClfSwitcher()),
])
parameters = [
'cst__model': [RandomForestClassifier()],
'cst__model__n_estimators': [10, 20],
'cst__model__max_depth': [5, 10],
'cst__model__criterion': ['gini', 'entropy']
,
'cst__model': [SVC()],
'cst__model__C': [10, 20],
'cst__model__kernel': ['linear'],
'cst__model__gamma': [0.0001, 0.001]
,
'cst__model': [LogisticRegression()],
'cst__model__C': [13, 17],
'cst__model__penalty': ['l1', 'l2']
,
'cst__model': [GradientBoostingClassifier()],
'cst__model__n_estimators': [10, 50],
'cst__model__max_depth': [3, 5],
'cst__model__min_samples_leaf': [1, 2]
]
my_report = report()
my_report.griddy(pipeline, parameters, scoring='f1')
my_report.fit_grid(X_train, y_train)
my_report.make_concise_report()
my_report.concise_report
python machine-learning
python machine-learning
asked 6 mins ago
scientific_explorerscientific_explorer
112
112
add a comment |
add a comment |
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$window.on('scroll', onScroll);
);
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StackExchange.ready(function ()
StackExchange.helpers.onClickDraftSave('#login-link');
var $window = $(window),
onScroll = function(e)
var $elem = $('.new-login-left'),
docViewTop = $window.scrollTop(),
docViewBottom = docViewTop + $window.height(),
elemTop = $elem.offset().top,
elemBottom = elemTop + $elem.height();
if ((docViewTop elemBottom))
StackExchange.using('gps', function() StackExchange.gps.track('embedded_signup_form.view', location: 'question_page' ); );
$window.unbind('scroll', onScroll);
;
$window.on('scroll', onScroll);
);
Sign up using Google
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Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown